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This meeting took place in 2015
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DNA Methylation (Z1)
Organizer(s) Alexander Meissner and Dirk Schübeler
March 29—April 3, 2015
Keystone Resort • Keystone, CO USA
Discounted Abstract Deadline: Dec 3, 2014
Abstract Deadline: Jan 8, 2015
Scholarship Deadline: Dec 3, 2014
Discounted Registration Deadline: Jan 29, 2015
Supported by the Directors' Fund
Joint Meeting:
Epigenomics (Z2)
Summary of Meeting:
DNA methylation is essential for mammalian development and plays an important regulatory role in many organisms including plants. Major advances have been made in functionally studying the key players involved in establishing and maintaining DNA methylation as well as mapping its genome-wide location. Many gaps remain toward a complete understanding in particular in diseases. In this meeting experts in the field provide the latest insights from plants to mammalian development. A further focus is the relevance of DNA methylation for cancer biology and how it may lead to more advanced diagnostics and treatments in the clinic.
View Scholarships/Awards
DNA methylation is essential for mammalian development and plays an important regulatory role in many organisms including plants. Major advances have been made in functionally studying the key players involved in establishing and maintaining DNA methylation as well as mapping its genome-wide location. Many gaps remain toward a complete understanding in particular in diseases. In this meeting experts in the field provide the latest insights from plants to mammalian development. A further focus is the relevance of DNA methylation for cancer biology and how it may lead to more advanced diagnostics and treatments in the clinic.
View Scholarships/Awards
No registration fees are used to fund entertainment or alcohol at this conference
SUNDAY, MARCH 29
MONDAY, MARCH 30
TUESDAY, MARCH 31
WEDNESDAY, APRIL 1
THURSDAY, APRIL 2
FRIDAY, APRIL 3
Conference Program Print | View meeting in 12 hr (am/pm) time
SUNDAY, MARCH 29
18:00—20:00
Welcome Mixer
No registration fees are used to fund alcohol served at this function.
08:00—09:00
Keynote Address (Joint)
*
Daniel Zilberman,
University of California, Berkeley, USA
Adrian P. Bird,
University of Edinburgh, UK
DNA Methylation and Other CpG Signaling
DNA Methylation and Other CpG Signaling
09:00—11:30
Genome-Wide DNA Methylation I (Joint)
*
Dirk Schübeler,
Friedrich Miescher Institute for Biomedical Research, Switzerland
Alexander Meissner,
Max Planck Institute for Molecular Genetics, Germany
DNA Methylation Dynamics in Development and Disease
DNA Methylation Dynamics in Development and Disease
Ryan Lister,
University of Western Australia, Australia
Short Talk: Large-Scale Interrogation of the Repressive Capacity of Human Promoter DNA Methylation by Genome-Wide Epigenomic Manipulation
Short Talk: Large-Scale Interrogation of the Repressive Capacity of Human Promoter DNA Methylation by Genome-Wide Epigenomic Manipulation
Bradley R. Cairns,
HHMI/University of Utah, USA
Chromatin-Transcription Dynamics in Developing Germline Stem Cells
Chromatin-Transcription Dynamics in Developing Germline Stem Cells
Marie Classon,
, USA
Short Talk: A Heterochromatic State Required for the Survival of Drug-Tolerant Cancer Cell Populations
Short Talk: A Heterochromatic State Required for the Survival of Drug-Tolerant Cancer Cell Populations
14:30—16:30
Workshop 1: Roadmap Epigenomic Tutorial
Designed to highlight resources generated by the NIH Roadmap Epigenomic Project and related international human epigenome projects from 10 countries. Speakers include investigators currently participating in these large-scale projects.
*
Ting Wang,
Washington University, USA
17:00—19:15
DNA Methylation in Early Development
*
Anne C. Ferguson-Smith,
University of Cambridge, UK
Wolf Reik,
Babraham Institute, UK
Epigenetic Reprogramming in Mammalian Development
Epigenetic Reprogramming in Mammalian Development
Matthew C. Lorincz,
University of British Columbia, Canada
Impact of LTR Retrotransposons on the Transcriptome and Methylome in the Mouse Germline
Impact of LTR Retrotransposons on the Transcriptome and Methylome in the Mouse Germline
Jonathan I. Gent,
University of Georgia, USA
Short Talk: RNA-Directed DNA Methylation in Suppression of Intronic Transposons: Minimizing Collateral Damage on Host Gene Expression
Short Talk: RNA-Directed DNA Methylation in Suppression of Intronic Transposons: Minimizing Collateral Damage on Host Gene Expression
Marius Walter,
Institut Curie, France
Short Talk: Transposon Regulation upon Acute Loss of DNA Methylation
Short Talk: Transposon Regulation upon Acute Loss of DNA Methylation
Vincent Colot,
École Normale Supérieure, France
Molecular and Developmental Basis of Progressive DNA Methylation across Generations
Molecular and Developmental Basis of Progressive DNA Methylation across Generations
17:00—19:15
Nucleosome Dynamics
*
Barbara J. Meyer,
University of California, Berkeley, USA
Alicia N. Schep,
Stanford University, USA
Short Talk: NucleoATAC: Structured ATAC-seq Signal Around Nucleosomes Enables High-Resolution Nucleosome Positioning
Short Talk: NucleoATAC: Structured ATAC-seq Signal Around Nucleosomes Enables High-Resolution Nucleosome Positioning
B. Franklin Pugh,
Pennsylvania State University, USA
Genome-Wide Organization of Chromatin
Genome-Wide Organization of Chromatin
Jeffrey N. McKnight,
Fred Hutchinson Cancer Research Center, USA
Short Talk: Global Relocalization of the Rpd3 Histone Deacetylase Drives Quiescence Entry in S. cerevisiae
Short Talk: Global Relocalization of the Rpd3 Histone Deacetylase Drives Quiescence Entry in S. cerevisiae
Jason D. Lieb,
University of Chicago, USA
Evidence for Lamin A Function at Enhancers, with Implications for Hutchinson-Gilford Progeria
Evidence for Lamin A Function at Enhancers, with Implications for Hutchinson-Gilford Progeria
19:15—20:15
Social Hour with Lite Bites
No registration fees are used to fund alcohol served at this function.
08:00—11:45
Regulation and Reading of DNA Methylation
*
Margaret A. Goodell,
Baylor College of Medicine, USA
Timothy H. Bestor,
Columbia University College of Physicians and Surgeons, USA
FBXL10 Defends Polycomb-Bound Genes Against Hypermethylation
FBXL10 Defends Polycomb-Bound Genes Against Hypermethylation
Xiaodong Cheng,
Emory University, USA
Generation, Recognition and Erasure (GRE) of 5-Methylcytosine and its Oxidative Derivatives
Generation, Recognition and Erasure (GRE) of 5-Methylcytosine and its Oxidative Derivatives
Sriharsa Pradhan,
New England Biolabs, USA
Regulation of DNMT1 Stability and Activity by Reader, Writer, Eraser and MicroRNA
Regulation of DNMT1 Stability and Activity by Reader, Writer, Eraser and MicroRNA
Jiahao Huang,
Babraham Institute, UK
Short Talk: Histone Modifiers Maintain Fidelity of de novo DNA Methylation in Growing Oocytes
Short Talk: Histone Modifiers Maintain Fidelity of de novo DNA Methylation in Growing Oocytes
Jafar Sharif,
RIKEN IMS, Japan
Short Talk: Protracted NP95 Binding to Hemimethylated DNA Disrupts SETDB1-Mediated Proviral Silencing
Short Talk: Protracted NP95 Binding to Hemimethylated DNA Disrupts SETDB1-Mediated Proviral Silencing
Robert A. Martienssen,
Cold Spring Harbor Laboratory, USA
Genome Reprogramming by Histone Variants and Small RNA
Genome Reprogramming by Histone Variants and Small RNA
Manu J. Dubin,
Gregor Mendel Institute, Austria
Short Talk: DNA Methylation Variation in Arabidopsis Has a Genetic Basis and Shows Evidence of Local Adaptation
Short Talk: DNA Methylation Variation in Arabidopsis Has a Genetic Basis and Shows Evidence of Local Adaptation
08:00—11:00
Functional Chromatin Domains
*
Bas van Steensel,
Netherlands Cancer Institute, Netherlands
Barbara J. Meyer,
University of California, Berkeley, USA
Condensin-Driven Remodeling of X-Chromosome Topology during Dosage Compensation
Condensin-Driven Remodeling of X-Chromosome Topology during Dosage Compensation
Elphège P. Nora,
Gladstone Institute, USA
Short Talk: Life without CTCF (at Least for a Short While)
Short Talk: Life without CTCF (at Least for a Short While)
Sarah Elderkin,
Babraham Institute, UK
Short Talk: Polycomb Repressive Complex PRC1 Spatially Constrains the Mouse Embryonic Stem Cell Genome to Regulate Pluripotency
Short Talk: Polycomb Repressive Complex PRC1 Spatially Constrains the Mouse Embryonic Stem Cell Genome to Regulate Pluripotency
Iestyn Whitehouse,
Memorial Sloan Kettering Cancer Center, USA
Chromatin Assembly: A View from the Lagging Strand
Chromatin Assembly: A View from the Lagging Strand
Natasha E. Weiser,
University of Michigan, USA
Short Talk: MORC-1 Regulates Endogenous Small RNAs, Chromatin Organization and Germline Immortality
Short Talk: MORC-1 Regulates Endogenous Small RNAs, Chromatin Organization and Germline Immortality
Manolis Kellis,
Massachusetts Institute of Technology, Broad Institute, USA
Interplay between Chromatin State, Regulator Binding and Regulatory Motifs
Interplay between Chromatin State, Regulator Binding and Regulatory Motifs
17:00—19:15
Intermediate and Allele-Specific DNA Methylation
*
Matthew C. Lorincz,
University of British Columbia, Canada
Joseph F. Costello,
University of California, San Francisco, USA
The Function of Intermediate DNA Methylation
The Function of Intermediate DNA Methylation
Wenfeng An,
South Dakota State University, USA
Short Talk: Retrotransposing Single-Copy Sequences into the Mouse Genome Reveals Sloping Shores: A Graded Influence of Hypomethylated CpG Islands on Flanking CpG Sites
Short Talk: Retrotransposing Single-Copy Sequences into the Mouse Genome Reveals Sloping Shores: A Graded Influence of Hypomethylated CpG Islands on Flanking CpG Sites
Marisa S. Bartolomei,
University of Pennsylvania Perelman School of Medicine, USA
Insulators, CTCF and DNA Methylation in Imprinted Gene Clusters
Insulators, CTCF and DNA Methylation in Imprinted Gene Clusters
Anne C. Ferguson-Smith,
University of Cambridge, UK
Genomic Imprinting and Parental-Origin Effects
Genomic Imprinting and Parental-Origin Effects
Claude Becker,
Max Planck Institute for Developmental Biology, Germany
Short Talk: Maternal Transmission of Increased Salt Stress Tolerance in Arabidopsis Is Linked to DNA Methylation
Short Talk: Maternal Transmission of Increased Salt Stress Tolerance in Arabidopsis Is Linked to DNA Methylation
17:00—19:15
Chromatin Regulation of Development
*
Manolis Kellis,
Massachusetts Institute of Technology, Broad Institute, USA
Joanna Wysocka,
Stanford University, USA
Retroelement Reactivation in Human Preimplantation Development
Retroelement Reactivation in Human Preimplantation Development
Christopher W. Ng,
Massachusetts Institute of Technology, USA
Short Talk: Epigenetic Ensembles Presage Transcriptional Changes in Differentiation and Disease
Short Talk: Epigenetic Ensembles Presage Transcriptional Changes in Differentiation and Disease
Karine G. Le Roch,
University of California, Riverside, USA
Short Talk: Association between Chromatin Structure, Gene Regulation and Pathogenicity in the Human Malaria Parasite, Plasmodium falciparum
Short Talk: Association between Chromatin Structure, Gene Regulation and Pathogenicity in the Human Malaria Parasite, Plasmodium falciparum
Andrew Dimond,
Babraham Institute, UK
Short Talk: Developmental Gene Promoters Establish Poised Enhancer Contacts in Embryonic Stem Cells
Short Talk: Developmental Gene Promoters Establish Poised Enhancer Contacts in Embryonic Stem Cells
Jeremie F. Poschmann,
Genome Institute of Singapore, Singapore
Short Talk: Large-Scale Mapping of Chromatin-Altering Polymorphisms Reveals Molecular Drivers of Human Disease
Short Talk: Large-Scale Mapping of Chromatin-Altering Polymorphisms Reveals Molecular Drivers of Human Disease
John A. Stamatoyannopoulos,
Altius Institute for Biomedical Sciences, USA
Encoding Epigenesis
Encoding Epigenesis
19:15—20:15
Social Hour with Lite Bites
No registration fees are used to fund alcohol served at this function.
08:00—11:45
Perturbations of DNA Methylation in Disease
Peter A. Jones,
Van Andel Research Institute, USA
Cancer Therapy
Cancer Therapy
Benjamin Leadem,
NIDDK, National Institutes of Health, USA
Short Talk: Novel Inhibitors of KDM5 Family Proteins Synergize with DNMT Inhibitors to Regulate Gene Expression and Inhibit Proliferation of Breast Cancer Cells
Short Talk: Novel Inhibitors of KDM5 Family Proteins Synergize with DNMT Inhibitors to Regulate Gene Expression and Inhibit Proliferation of Breast Cancer Cells
Jeanne F. Loring,
The Scripps Research Institute, USA
Dynamics of DNA Methylation in Human Pluripotent Stem Cell Differentiation
Dynamics of DNA Methylation in Human Pluripotent Stem Cell Differentiation
Ralf Gilsbach,
University of Freiburg, Germany
Short Talk: Stage-Specific Gene Expression Programs in Cardiomyocytes Rely on Dynamic CpG-Methylation or Polycomb Repressive Marks
Short Talk: Stage-Specific Gene Expression Programs in Cardiomyocytes Rely on Dynamic CpG-Methylation or Polycomb Repressive Marks
Amos Tanay,
Weizmann Institute, Israel
Single-Cell Transcriptional and Epigenomic Approaches to Complex Cell Populations
Single-Cell Transcriptional and Epigenomic Approaches to Complex Cell Populations
Yvette A. Luyten,
New England Biolabs, USA
Short Talk: Bacterial DNA Methyltransferases: A New “Class” of Type I Restriction Modification Enzymes Utilizing Two Distinct DNA Methyltransferase Genes
Short Talk: Bacterial DNA Methyltransferases: A New “Class” of Type I Restriction Modification Enzymes Utilizing Two Distinct DNA Methyltransferase Genes
08:00—11:15
Higher-Order Chromatin Organization
*
Erez Lieberman-Aiden,
Baylor College of Medicine, USA
Noam Kaplan,
University of Massachusetts Medical School, USA
How the 1D Genome Encodes 3D Topologically Associating Domains
How the 1D Genome Encodes 3D Topologically Associating Domains
Edith Heard,
European Molecular Biology Laboratory, Germany
The Dynamics of X-Chromosome Structure and Activity during X Inactivation
The Dynamics of X-Chromosome Structure and Activity during X Inactivation
Suhas S.P. Rao,
Baylor College of Medicine, USA
Short Talk: Extremely High-Resolution 3D Maps of Human and Mouse Genomes Across Lineages and during Differentiation Reveal Principles of Chromatin Looping
Short Talk: Extremely High-Resolution 3D Maps of Human and Mouse Genomes Across Lineages and during Differentiation Reveal Principles of Chromatin Looping
Bas van Steensel,
Netherlands Cancer Institute, Netherlands
Mapping Genome – Nuclear Lamina Interactions in Single Cells
Mapping Genome – Nuclear Lamina Interactions in Single Cells
Peter Fraser,
Florida State University, USA
Single Molecule Analyses of Chromosome Folding and Genome Organization by Single-Cell Hi-C
Single Molecule Analyses of Chromosome Folding and Genome Organization by Single-Cell Hi-C
Robert A. Beagrie,
MRC Clinical Sciences Centre, UK
Short Talk: Novel, Ligation-Free Method for Identifying Chromatin Interactions Genome-Wide
Short Talk: Novel, Ligation-Free Method for Identifying Chromatin Interactions Genome-Wide
14:30—16:30
Workshop: Modeling DNA Methylation
*
Amos Tanay,
Weizmann Institute, Israel
*
Remo Rohs,
University of Southern California, USA
Modeling of the Effect of DNA Methylation on DNA Shape and Protein-DNA Binding
Modeling of the Effect of DNA Methylation on DNA Shape and Protein-DNA Binding
Michael M. Hoffman,
University of Toronto, Canada
Transcription Factor Binding in an Expanded Epigenetic Alphabet
Transcription Factor Binding in an Expanded Epigenetic Alphabet
Önder Kartal,
University of Zürich, Switzerland
An Information-Theoretic Approach to Discover Differential DNA Methylation in Plants Suggests that Diversity Is Highest in the CG Context
An Information-Theoretic Approach to Discover Differential DNA Methylation in Plants Suggests that Diversity Is Highest in the CG Context
Fabian Müller,
Stanford University, USA
Computational Methods for the DEEP Characterization of DNA Methylation BLUEPRINTs
Computational Methods for the DEEP Characterization of DNA Methylation BLUEPRINTs
Yaping Liu,
Cincinnati Children's Hospital Medical Center, USA
meQTLFinder: A Bayesian Model to Detect meQTL by Using Chromatin States and Chromatin Interaction Prior Information
meQTLFinder: A Bayesian Model to Detect meQTL by Using Chromatin States and Chromatin Interaction Prior Information
David Gokhman,
Hebrew University of Jerusalem, Israel
Paleo-Epigenetics: Reconstructing the DNA Methylation Maps of Archaic Hominins
Paleo-Epigenetics: Reconstructing the DNA Methylation Maps of Archaic Hominins
17:00—19:15
DNA Methylation as a Biomarker
*
Peter A. Jones,
Van Andel Research Institute, USA
Peter W. Laird,
Van Andel Research Institute, USA
Cancer Methylomes
Cancer Methylomes
Michiel Vermeulen,
Radboud University, Netherlands
Quantitative Interaction Proteomics for Epigenetics
Quantitative Interaction Proteomics for Epigenetics
Xueguang Sun,
Zymo Research Corp, USA
Short Talk: Mirror Bisulfite Sequencing (Mirror-Seq): A Novel Sequencing Method for Genome-Wide Profiling of 5-Hydroxymethylcytosine with Single-Base Resolution
Short Talk: Mirror Bisulfite Sequencing (Mirror-Seq): A Novel Sequencing Method for Genome-Wide Profiling of 5-Hydroxymethylcytosine with Single-Base Resolution
Shinji Maegawa,
Temple University, USA
Short Talk: DNA Methylation Drift as a Marker of Lifespan in Mammals
Short Talk: DNA Methylation Drift as a Marker of Lifespan in Mammals
17:00—19:15
Small RNA
*
John L. Rinn,
University of Colorado Boulder, USA
Amy E. Pasquinelli,
University of California, San Diego, USA
The Primary Target of let-7 MicroRNA
The Primary Target of let-7 MicroRNA
Haifan Lin,
Yale University, USA
Multifaceted Roles of the Piwi-piRNA Pathway in Gene Regulation
Multifaceted Roles of the Piwi-piRNA Pathway in Gene Regulation
Alla Grishok,
Columbia University Medical Center, USA
Short Talk: Connecting Euchromatin and Endogenous RNAi in C. elegans
Short Talk: Connecting Euchromatin and Endogenous RNAi in C. elegans
Sam (Guoping) Gu,
Rutgers University, USA
Short Talk: siRNA-Mediated Chromatin Regulation and Multigenerational Homeostasis of Germline Gene Expression in C. elegans
Short Talk: siRNA-Mediated Chromatin Regulation and Multigenerational Homeostasis of Germline Gene Expression in C. elegans
19:15—20:15
Social Hour with Lite Bites
No registration fees are used to fund alcohol served at this function.
08:00—11:15
Genome-Wide DNA Methylation II (Joint)
*
Alexander Meissner,
Max Planck Institute for Molecular Genetics, Germany
Joseph R. Ecker,
The Salk Institute for Biological Studies, USA
Human Body Epigenome Maps Reveal Noncanonical DNA Methylation Variation
Human Body Epigenome Maps Reveal Noncanonical DNA Methylation Variation
Bing Ren,
Ludwig Institute for Cancer Research, USA
Integrative Analysis of Haplotype-Resolved Epigenomes across Human Tissues
Integrative Analysis of Haplotype-Resolved Epigenomes across Human Tissues
Daniel Zilberman,
University of California, Berkeley, USA
Molecular Co-Evolution of Genomes and Chromatin
Molecular Co-Evolution of Genomes and Chromatin
Andrew G. Clark,
Cornell University, USA
Short Talk: Analysis of Novel Marsupial-Specific Imprinted Genes and their DMRs in the Opossum, Monodelphis domestica
Short Talk: Analysis of Novel Marsupial-Specific Imprinted Genes and their DMRs in the Opossum, Monodelphis domestica
Camila O. dos Santos,
Cold Spring Harbor Laboratory, USA
Short Talk: An Epigenetic Memory of Pregnancy in the Mouse Mammary Gland
Short Talk: An Epigenetic Memory of Pregnancy in the Mouse Mammary Gland
Dirk Schübeler,
Friedrich Miescher Institute for Biomedical Research, Switzerland
Sequence and Chromatin Determinants of DNA Methylation
Sequence and Chromatin Determinants of DNA Methylation
14:30—16:30
Workshop 2: ENCODE Datasets Tutorial
*
Feng Yue,
Pennsylvania State University, USA
17:00—19:00
DNA Methylation Turnover
*
Xiaodong Cheng,
Emory University, USA
Frédéric L. Chedin,
University of California, Davis, USA
Epigenomics Signatures of R-Loop Forming Regions
Epigenomics Signatures of R-Loop Forming Regions
Salvatore Oliviero,
Human Genetics Foundation, HuGeF, Italy
Short Talk: Single-Base Resolution Analysis of 5-Formyl and 5-Carboxyl Cytosine Reveals DNA Methylation/Demethylation Dynamics in the Mammalian Genome
Short Talk: Single-Base Resolution Analysis of 5-Formyl and 5-Carboxyl Cytosine Reveals DNA Methylation/Demethylation Dynamics in the Mammalian Genome
17:00—19:00
Long Noncoding RNA
*
Amy E. Pasquinelli,
University of California, San Diego, USA
John L. Rinn,
University of Colorado Boulder, USA
RNA-Binding Proteins Interact Specifically with Transposable Element Sequence in Human Genes
RNA-Binding Proteins Interact Specifically with Transposable Element Sequence in Human Genes
Jindan Yu,
Northwestern University Feinberg School of Medicine, USA
Short Talk: LncRNA HOTAIR Enhances the Androgen Receptor-Mediated Transcriptional Program and Drives Castration-Resistant Prostate Cancer
Short Talk: LncRNA HOTAIR Enhances the Androgen Receptor-Mediated Transcriptional Program and Drives Castration-Resistant Prostate Cancer
L. Stirling Churchman,
Harvard Medical School, USA
Short Talk: High-Resolution Architecture of Human Transcriptional Activity Revealed by Native Elongating Transcript Sequencing
Short Talk: High-Resolution Architecture of Human Transcriptional Activity Revealed by Native Elongating Transcript Sequencing
Gilad Fuchs,
Weizmann Institute of Science, Israel
Short Talk: Cotranscriptional Histone H2B Monoubiquitylation Is Tightly Coupled with RNA Polymerase II Elongation Rate
Short Talk: Cotranscriptional Histone H2B Monoubiquitylation Is Tightly Coupled with RNA Polymerase II Elongation Rate
Mitchell Guttman,
California Institute of Technology, USA
lncRNAs: Function and Mechanism in Controlling Cellular Identity
lncRNAs: Function and Mechanism in Controlling Cellular Identity
19:15—20:15
Social Hour with Lite Bites
No registration fees are used to fund alcohol served at this function.
20:00—23:00
Entertainment
Entertainment is not subsidized by conference registration fees nor any U.S. federal government grants. Funding for this expense is provided by other revenue sources.
*Session Chair †Invited, not yet responded.
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