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This meeting took place in 2017
Here are the related meetings in 2021:
Single Cell Biology (C5)
For a complete list of the meetings for the upcoming/current season, see our meeting list, or search for a meeting.
Single Cell Omics (E3)
Organizer(s) Sarah Teichmann, Evan W. Newell and William J. Greenleaf
May 26—30, 2017
Clarion Hotel Sign • Stockholm, Sweden
Discounted Abstract Deadline: Jan 26, 2017
Abstract Deadline: Feb 28, 2017
Scholarship Deadline: Jan 26, 2017
Discounted Registration Deadline: Mar 28, 2017
Organized in collaboration with Knut and Alice Wallenberg Foundation and Science for Life Laboratory. Sponsored by Janssen R&D: Pharmaceutical Companies of Johnson & Johnson, Regeneron Pharmaceuticals, Inc. and Vertex Pharmaceuticals Incorporated.
Summary of Meeting:
Single cell omics is a new frontier in biology where genome-wide data is captured at the resolution of individual cells. Single cell high-throughput technologies are being developed in the areas of imaging, mass spectrometry and DNA- and RNA-sequencing, and combinations thereof. In addition, the corresponding software and visualization tools are an active field of research. Single cell omics has important implications for all areas of development, differentiation and cellular decision-making because these can now be studied at unprecedented resolution. Single cell omics methods are also shedding new light on immunity and cancer, due to the heterogeneous cell populations involved in both areas of biology. Therefore, these approaches are revolutionizing basic biology, our understanding of disease and technologies involved in translation to medicine. Since the field is in its infancy and there are few meetings dedicated to this topic, there is an unmet need in the community. This conference enables scientists in the field to congregate and exchange ideas and information about new methods and biological insights. A conference such as this will be of continuing importance until single cell omics technologies become commonplace and integrated into all areas of biology. Single cell omics has important implications for all areas of development, differentiation and cellular decision-making, because these can now be studied at unprecedented resolution. Equally, single cell omics methods are shedding new light on immunity and cancer, due to the heterogeneous cell populations involved in both areas of biology. Therefore, these approaches are revolutionizing both basic biology as well as our understanding of disease, and technologies involved in translation to medicine. Since the field is in its infancy, and there are few meetings dedicated to this topic, there is a huge unmet need in the community to congregate and exchange ideas and information about new methods and the biological insights gained. A meeting such as this will be of continuing importance until single cell omics technologies become commonplace and established, and integrated into all areas of biology.
View Scholarships/Awards
Single cell omics is a new frontier in biology where genome-wide data is captured at the resolution of individual cells. Single cell high-throughput technologies are being developed in the areas of imaging, mass spectrometry and DNA- and RNA-sequencing, and combinations thereof. In addition, the corresponding software and visualization tools are an active field of research. Single cell omics has important implications for all areas of development, differentiation and cellular decision-making because these can now be studied at unprecedented resolution. Single cell omics methods are also shedding new light on immunity and cancer, due to the heterogeneous cell populations involved in both areas of biology. Therefore, these approaches are revolutionizing basic biology, our understanding of disease and technologies involved in translation to medicine. Since the field is in its infancy and there are few meetings dedicated to this topic, there is an unmet need in the community. This conference enables scientists in the field to congregate and exchange ideas and information about new methods and biological insights. A conference such as this will be of continuing importance until single cell omics technologies become commonplace and integrated into all areas of biology. Single cell omics has important implications for all areas of development, differentiation and cellular decision-making, because these can now be studied at unprecedented resolution. Equally, single cell omics methods are shedding new light on immunity and cancer, due to the heterogeneous cell populations involved in both areas of biology. Therefore, these approaches are revolutionizing both basic biology as well as our understanding of disease, and technologies involved in translation to medicine. Since the field is in its infancy, and there are few meetings dedicated to this topic, there is a huge unmet need in the community to congregate and exchange ideas and information about new methods and the biological insights gained. A meeting such as this will be of continuing importance until single cell omics technologies become commonplace and established, and integrated into all areas of biology.
View Scholarships/Awards
No registration fees are used to fund entertainment or alcohol at this conference
The meeting will begin on Friday, May 26 with registration from 16:00 to 20:00 and a welcome mixer from 18:00 to 20:00. Conference events conclude on Tuesday, May 30 with a closing plenary session from 17:00 to 19:00, followed by a social hour and entertainment. We recommend return travel on Wednesday, May 31 in order to fully experience the meeting.
FRIDAY, MAY 26
SATURDAY, MAY 27
SUNDAY, MAY 28
MONDAY, MAY 29
TUESDAY, MAY 30
WEDNESDAY, MAY 31
Conference Program Print | View meeting in 12 hr (am/pm) time
The meeting will begin on Friday, May 26 with registration from 16:00 to 20:00 and a welcome mixer from 18:00 to 20:00. Conference events conclude on Tuesday, May 30 with a closing plenary session from 17:00 to 19:00, followed by a social hour and entertainment. We recommend return travel on Wednesday, May 31 in order to fully experience the meeting.
FRIDAY, MAY 26
08:30—09:30
Welcome and Keynote Address
*
Sarah Teichmann,
Wellcome Sanger Institute, UK
Alexander van Oudenaarden,
Hubrecht Institute, Netherlands
Revealing New Cell Types and Interactions Using Single Cell Omics
Revealing New Cell Types and Interactions Using Single Cell Omics
09:30—12:00
Single Cell DNA Sequencing and Cancer
*
Evan W. Newell,
Fred Hutchinson Cancer Research Center, USA
Anna Marciniak-Czochra,
University of Heidelberg, Germany
Mathematical Modeling of Heterogeneity, Clonal Selection and Emergence of Resistance in Acute Leukemias
Mathematical Modeling of Heterogeneity, Clonal Selection and Emergence of Resistance in Acute Leukemias
Coffee Break
Michael Stratton,
Wellcome Trust Sanger Institute, UK
Clonal Evolution of Cancers
Clonal Evolution of Cancers
Samuel Aparicio,
University of British Columbia, Canada
Clonal Dynamics in Cancer at Single Cell Resolution
Clonal Dynamics in Cancer at Single Cell Resolution
Massimiliano Pagani,
La Fondazione Istituto Nazionale di Genetica Molecolare - INGM, Italy
Short Talk: Single Cell Transcriptome Analysis of Human Tumor-Infiltrating T Regulatory Cells
Short Talk: Single Cell Transcriptome Analysis of Human Tumor-Infiltrating T Regulatory Cells
Joanna Hård,
Karolinska Institutet, Sweden
Short Talk: Identification of Clonal Somatic Mutations in DNA Sequencing Data from Single Cells
Short Talk: Identification of Clonal Somatic Mutations in DNA Sequencing Data from Single Cells
12:00—13:00
Path to Publication
This panel discussion and workshop, featuring editors from AAAS/Science, Cell Press, EMBO and Springer Nature, will provide insights to attendees on getting their work published in scientific journals and should be especially useful for early-career investigators.
*
Barbara Cheifet,
Genome Biology, USA
14:30—16:30
Workshop 1: Making Sense of Single Cell Data (Visualization, Analysis)
*
Alexander van Oudenaarden,
Hubrecht Institute, Netherlands
Joshua D. Campbell,
Boston University, USA
Don't Fear the Zeros: Identifying Transcriptional States and Cellular Populations in Sparse Single-Cell RNA-Seq Data with Bayesian Hierarchical Modeling
Don't Fear the Zeros: Identifying Transcriptional States and Cellular Populations in Sparse Single-Cell RNA-Seq Data with Bayesian Hierarchical Modeling
Dominic Grün,
Max Planck Institute of Immunobiology and Epigenetics, Germany
Single Cell RNA-Seq Reveals Cell Fate Bias of Multipotent Lymphoid Progenitors
Single Cell RNA-Seq Reveals Cell Fate Bias of Multipotent Lymphoid Progenitors
Sue Hammoud,
University of Michigan, USA
Functional Heterogeneity of Spermatogenesis Revealed by >27,000 Single Cells of Mouse Testis
Functional Heterogeneity of Spermatogenesis Revealed by >27,000 Single Cells of Mouse Testis
Martin Hemberg,
Wellcome Trust Sanger Institute, UK
VR Genome Browser - Using Virtual Reality to Visualize Complex Genomic Data
VR Genome Browser - Using Virtual Reality to Visualize Complex Genomic Data
Bojan Losic,
Icahn School of Medicine at Sinai, USA
Predicting Peanut Allergic Reaction with Integrative Single Cell Models of T Cell Immuno-Synapse
Predicting Peanut Allergic Reaction with Integrative Single Cell Models of T Cell Immuno-Synapse
Santiago J. Carmona,
University of Lausanne, Switzerland
Single-Cell Transcriptomics of Zebrafish Immune Cells Provides Insight into the Evolution of Vertebrate Immune Cell Types
Single-Cell Transcriptomics of Zebrafish Immune Cells Provides Insight into the Evolution of Vertebrate Immune Cell Types
17:00—19:00
High-Throughput Imaging for Single Cell Analysis
*
Ana Pombo,
Max-Delbrück-Centrum für Molekulare Medizin, Germany
Rahul Satija,
New York Genome Center, USA
Learning the "Metadata" of a Cell with Single Cell Genomics
Learning the "Metadata" of a Cell with Single Cell Genomics
Long Cai,
California Institute of Technology, USA
Single Cell Expression Profiling and Lineage Dynamics by seqFISH and MEMOIR
Single Cell Expression Profiling and Lineage Dynamics by seqFISH and MEMOIR
Xiaowei Zhuang,
Harvard University, USA
In situ Transcriptome and Genome Imaging in Single Cells
In situ Transcriptome and Genome Imaging in Single Cells
Johan Elf,
Uppsala University, Sweden
Short Talk: Characterizing a library of cells at single molecule sensitivity
Short Talk: Characterizing a library of cells at single molecule sensitivity
19:00—20:00
Social Hour with Lite Bites
No registration fees are used to fund alcohol served at this function.
08:30—11:45
Single Cell Epigenomes
*
X. Sunney Xie,
Peking University, China
Edith Heard,
European Molecular Biology Laboratory, Germany
X Inactivation
X Inactivation
Coffee Break
Oliver Stegle,
European Bioinformatics Institute, UK
Methods and Applications for Single Cell Epigenetics
Methods and Applications for Single Cell Epigenetics
Steffen Rulands,
Max Planck Institute for the Physics of Complex Systems, Germany
Short Talk: Genome Scale Oscillations of DNA Methylation during Exit from Pluripotency
Short Talk: Genome Scale Oscillations of DNA Methylation during Exit from Pluripotency
Yasuyuki Ohkawa,
Kyushu University, Japan
Short Talk: ChILT - an Immunoprecipitation-Free Epigenome Profiling Technology
Short Talk: ChILT - an Immunoprecipitation-Free Epigenome Profiling Technology
17:00—19:15
Single Cell Transcriptomes
*
Dana Pe'er,
Memorial Sloan Kettering Cancer Center, USA
Sarah Teichmann,
Wellcome Sanger Institute, UK
Understanding Cellular Heterogeneity
Understanding Cellular Heterogeneity
Alexandra-Chloé Villani,
Broad Institute of MIT and Harvard, USA
Discovery of Human Immune Cell Populations by Single Cell Profiling
Discovery of Human Immune Cell Populations by Single Cell Profiling
Rickard Sandberg,
Karolinska Institutet, Sweden
Single Cell Gene Expression Analyses with Allelic Resolution
Single Cell Gene Expression Analyses with Allelic Resolution
19:15—20:15
Social Hour with Lite Bites
No registration fees are used to fund alcohol served at this function.
08:30—11:45
Single Cell Nuclear Architecture
*
William J. Greenleaf,
Stanford University, USA
Ana Pombo,
Max-Delbrück-Centrum für Molekulare Medizin, Germany
Genome Architecture Mapping, a New Single Cell Approach to Map Chromatin Contacts
Genome Architecture Mapping, a New Single Cell Approach to Map Chromatin Contacts
X. Sunney Xie,
Peking University, China
Single Cell Genomics: When Stochasticity Meets Precision
Single Cell Genomics: When Stochasticity Meets Precision
Coffee Break
Ulrike Litzenburger,
Stanford University, USA
Short Talk: Single-Cell Epigenomic Variability Reveals Functional Cancer Heterogeneity
Short Talk: Single-Cell Epigenomic Variability Reveals Functional Cancer Heterogeneity
Christoph Bock,
Austrian Academy of Sciences, Austria
Short Talk: CRISPR Screening with Single Cell Transcriptome Readout Establishes a High-Throughput Method for Dissecting Gene-Regulatory Mechanisms
Short Talk: CRISPR Screening with Single Cell Transcriptome Readout Establishes a High-Throughput Method for Dissecting Gene-Regulatory Mechanisms
Suman Bose,
Massachusetts Institute of Technology, USA
Short Talk: A Microfluidic Platform for High-Throughput Micro-RNA Profiling of Single Cells
Short Talk: A Microfluidic Platform for High-Throughput Micro-RNA Profiling of Single Cells
Anita Göndör,
Karolinska Institute, Sweden
Short Talk: Novel Feedback Loops between 3D Genome Organizers and the Circadian Clock Regulate Rhythmic Chromatin Transitions in the Nuclear Architecture
Short Talk: Novel Feedback Loops between 3D Genome Organizers and the Circadian Clock Regulate Rhythmic Chromatin Transitions in the Nuclear Architecture
Thomas Norman,
University of California, San Francisco, USA
Short Talk: Interpreting Genetic Screens using Perturb-seq
Short Talk: Interpreting Genetic Screens using Perturb-seq
Jeanette Baran-Gale,
University of Edinburgh, UK
Short Talk: The Complexity of Promiscuous Gene Expression in Medullary Thymic Epithelial Cells
Short Talk: The Complexity of Promiscuous Gene Expression in Medullary Thymic Epithelial Cells
12:00—14:00
SOLD OUT-Presentations and Posters by SciLifeLab with Complimentary Lunch (Must Register in Advance)
Advanced registration is needed. Click here to sign up for the lunch presentations.
14:00—15:45
SOLD OUT-On Location Tour of SciLifeLab Facilities
Advanced registration is needed and space is SEVERELY LIMITED. Registrations will be taken on a first come first served basis. Click here to sign up for the on location tour.
17:00—19:00
Spatial Omics
Mark D. Lynch,
Fluidigm Corporation, USA
Single Cell Omics and Functional Analysis
Single Cell Omics and Functional Analysis
*
John Marioni,
European Bioinformatics Institute, EMBL-EBI, UK
Modeling Cell Fate Decisions during Early Development
Modeling Cell Fate Decisions during Early Development
Je H. Lee,
Cold Spring Harbor Laboratory, USA
In situ Sequencing Platforms for Investigating Cellular Variations and Lineage
In situ Sequencing Platforms for Investigating Cellular Variations and Lineage
Mats Nilsson,
Science for Life Laboratory, Sweden
Short Talk: Spatial Neuron Cell-Type Mapping in Mouse Brain by in situ Sequencing
Short Talk: Spatial Neuron Cell-Type Mapping in Mouse Brain by in situ Sequencing
19:00—20:00
Social Hour with Lite Bites
No registration fees are used to fund alcohol served at this function.
08:30—11:45
Single Cell Proteomics
*
Shalin H. Naik,
Walter & Eliza Hall Institute, Australia
Evan W. Newell,
Fred Hutchinson Cancer Research Center, USA
High-Dimensional Cellular Immune Profiling in Health and Disease
High-Dimensional Cellular Immune Profiling in Health and Disease
Garry P. Nolan,
Stanford University, USA
System-Wide Order, from Disorder, at the Cancer-Immune Interface
System-Wide Order, from Disorder, at the Cancer-Immune Interface
Coffee Break
Dana Pe'er,
Memorial Sloan Kettering Cancer Center, USA
Machine Learning for Data Analysis and Visualization
Machine Learning for Data Analysis and Visualization
J. Christopher Love,
Massachusetts Institute of Technology, USA
Integrated Single Cell Analysis for Discovery and Development
Integrated Single Cell Analysis for Discovery and Development
Bogdan Budnik,
Harvard University, USA
Short Talk: Single Cell ProtEomics by Mass Spectrometry (SCoPE-MS) New Technique for Quantification Proteomes of Single Mammalian Cells
Short Talk: Single Cell ProtEomics by Mass Spectrometry (SCoPE-MS) New Technique for Quantification Proteomes of Single Mammalian Cells
Emma K. Lundberg,
SciLifeLab Stockholm and School of Biotechnology, KTH, Sweden
Short Talk: The Cell Atlas of the Human Protein Atlas
Short Talk: The Cell Atlas of the Human Protein Atlas
14:30—16:30
Workshop 2: Technology
*
Emma K. Lundberg,
SciLifeLab Stockholm and School of Biotechnology, KTH, Sweden
Kylie R. James,
Wellcome Trust Sanger Institute, UK
Resolving CD4+ T Helper Fate Bifurcation during Malaria
Resolving CD4+ T Helper Fate Bifurcation during Malaria
Nemanja Despot Marjanovic,
Massachusetts Institute of Technology, USA
Longitudinal Profiling of Tumor Evolution in Autochthonous Mouse Models of Kras-Driven Human Lung Adenocarcinoma
Longitudinal Profiling of Tumor Evolution in Autochthonous Mouse Models of Kras-Driven Human Lung Adenocarcinoma
Wissam H. Hamou,
Icahn School of Medicine at Mount Sinai, USA
Flexible Single Cell Isolation Technologies Combined with High-Throughput Targeted Sequencing Enable the Characterization of Intratumor Heterogeneity
Flexible Single Cell Isolation Technologies Combined with High-Throughput Targeted Sequencing Enable the Characterization of Intratumor Heterogeneity
Linda Kvastad,
Royal Institute of Technology, Sweden
In Situ Quality Control Assay Generates a Spatial Heat Map of RNA Integrity with Single Cell Resolution
In Situ Quality Control Assay Generates a Spatial Heat Map of RNA Integrity with Single Cell Resolution
Leeat Keren,
Stanford University, USA
Characterization of Tumor Immune Microenvironment in Breast Cancer using Multiplexed Imaging
Characterization of Tumor Immune Microenvironment in Breast Cancer using Multiplexed Imaging
17:00—18:45
Single Cell Immunology
*
Garry P. Nolan,
Stanford University, USA
Richard Conroy,
NIH Common Fund, USA
HuBMap
HuBMap
Nir Friedman,
Weizmann Institute of Science, Israel
Clonal Expansion under the Microscope: Imaging Collective T Cell Responses with Single Cell Resolution
Clonal Expansion under the Microscope: Imaging Collective T Cell Responses with Single Cell Resolution
19:00—20:00
Social Hour with Lite Bites
No registration fees are used to fund alcohol served at this function.
20:00—23:00
Entertainment
Entertainment is not subsidized by conference registration fees nor any U.S. federal government grants. Funding for this expense is provided by other revenue sources.
*Session Chair †Invited, not yet responded.
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